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-rw-r--r--src/likelihood.c14
1 files changed, 10 insertions, 4 deletions
diff --git a/src/likelihood.c b/src/likelihood.c
index 4e24a79..a4864a8 100644
--- a/src/likelihood.c
+++ b/src/likelihood.c
@@ -78,7 +78,7 @@ static double gsl_muon_time(double x, void *params)
{
double *params2 = (double *) params;
double T0 = params2[0];
- double pos0[3], dir[3], pos[3], pmt_dir[3];
+ double pos0[3], dir[3], pos[3], pmt_dir[3], R, n, wavelength0;
int i;
double t;
i = (int) params2[1];
@@ -93,13 +93,19 @@ static double gsl_muon_time(double x, void *params)
pos[1] = pos0[1] + dir[1]*x;
pos[2] = pos0[2] + dir[2]*x;
+ R = NORM(pos);
+
SUB(pmt_dir,pmts[i].pos,pos);
double distance = NORM(pmt_dir);
/* FIXME: I just calculate delta assuming 400 nm light. */
- double wavelength0 = 400.0;
- double n = get_index(HEAVY_WATER_DENSITY, wavelength0, 10.0);
+ wavelength0 = 400.0;
+ if (R <= AV_RADIUS) {
+ n = get_index_snoman_d2o(wavelength0);
+ } else {
+ n = get_index_snoman_h2o(wavelength0);
+ }
t = x/SPEED_OF_LIGHT + distance*n/SPEED_OF_LIGHT;
@@ -197,7 +203,7 @@ double nll_muon(event *ev, double T, double *pos, double *dir, double t0)
* just to split up the integral, we only need to find a point along
* the track close enough such that the integral isn't completely zero.
*/
- theta_cerenkov = acos(1/get_index(WATER_DENSITY,400.0,10.0));
+ theta_cerenkov = acos(1/get_index_snoman_d2o(400.0));
/* Now, we compute the distance along the track where the PMT is at the
* Cerenkov angle. */