#!/usr/bin/env python """ Script to delete zdab files which have all been successfully fit. """ from sddm.logger import Logger log = Logger() if __name__ == '__main__': import argparse import sqlite3 import os from os.path import join, split, exists import numpy as np parser = argparse.ArgumentParser("delete zdab files which have all been successfully fit") parser.add_argument("--db", type=str, help="database file", default=None) parser.add_argument('--loglevel', help="logging level (debug, verbose, notice, warning)", default='notice') parser.add_argument('--logfile', default=None, help="filename for log file") args = parser.parse_args() log.set_verbosity(args.loglevel) if args.logfile: log.set_logfile(args.logfile) home = os.path.expanduser("~") if args.db is None: args.db = join(home,'state.db') conn = sqlite3.connect(args.db) c = conn.cursor() results = c.execute('SELECT filename, state FROM state').fetchall() unique_filenames = set(row[0] for row in results) for filename in unique_filenames: if not exists(filename): continue head, tail = split(filename) success = [row[1] == 'SUCCESS' for row in results if row[0] == filename] if all(success): log.notice("deleting %s because all %i jobs were successfull" % (tail, len(success))) os.remove(filename) else: log.debug("skipping %s because %i/%i jobs haven't finished" % (tail, len(success) - np.count_nonzero(success), len(success))) conn.close() d='get' action='/cgit/sddm/log/utils/plot-likelihood'>
path: root/utils/plot-likelihood
blob: 24422367669ac769ee888c58354b2c7345a66b7d (plain) 
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#!/usr/bin/env python
# Copyright (c) 2019, Anthony Latorre <tlatorre at uchicago>
#
# This program is free software: you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by the Free
# Software Foundation, either version 3 of the License, or (at your option)
# any later version.
#
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for
# more details.
#
# You should have received a copy of the GNU General Public License along with
# this program. If not, see <https://www.gnu.org/licenses/>.

from __future__ import print_function, division
import numpy as np

# on retina screens, the default plots are way too small
# by using Qt5 and setting QT_AUTO_SCREEN_SCALE_FACTOR=1
# Qt5 will scale everything using the dpi in ~/.Xresources
import matplotlib
matplotlib.use("Qt5Agg")

if __name__ == '__main__':
    import argparse
    from mpl_toolkits.mplot3d import axes3d
    import matplotlib.pyplot as plt

    parser = argparse.ArgumentParser("plot likelihood function")
    parser.add_argument("filenames", nargs='+', help="input files")
    args = parser.parse_args()

    for filename in args.filenames:
        print(filename)
        data = np.genfromtxt(filename)

        fig = plt.figure()
        ax = fig.add_subplot(111, projection='3d')

        X = data[:,0].reshape((50,50))
        Y = data[:,1].reshape((50,50))
        Z = data[:,2].reshape((50,50))

        ax.plot_wireframe(X, Y, Z)

    plt.show()